Components

class grandchallenge.components.models.ComponentInterface(id, overlay_segments, look_up_table, title, slug, description, default_value, schema, kind, relative_path, store_in_database)[source]

Parameters

id (AutoField) – Id
overlay_segments (JSONField) – Overlay segments. The schema that defines how categories of values in the overlay images are differentiated.
look_up_table (ForeignKey to LookUpTable) – Look up table. The look-up table that is applied when an overlay image is first shown
title (CharField) – Title. Human readable name of this input/output field.
slug (AutoSlugField) – Slug
description (TextField) – Description. Description of this input/output field.
default_value (JSONField) – Default value. Default value for this field, only valid for inputs.
schema (JSONField) – Schema. Additional JSON schema that the values for this interface must satisfy. See https://json-schema.org/. Only Draft 7, 6, 4 or 3 are supported.
kind (CharField) – Kind. What is the type of this interface? Used to validate interface values and connections between components.
relative_path (CharField) – Relative path. The path to the entity that implements this interface relative to the input or output directory.
store_in_database (BooleanField) – Store in database. Should the value be saved in a database field, only valid for outputs.

exception DoesNotExist

Kind: alias of InterfaceKindChoices

exception MultipleObjectsReturned

__init__(*args, **kwargs)[source]

clean()[source]: Hook for doing any extra model-wide validation after clean() has been called on every field by self.clean_fields. Any ValidationError raised by this method will not be associated with a particular field; it will have a special-case association with the field defined by NON_FIELD_ERRORS.

validate_against_schema(*, value)[source]: Validates values against both default and custom schemas

class grandchallenge.components.models.ComponentInterfaceValue(*args, **kwargs)[source]

Encapsulates the value of an interface at a certain point in the graph.

Parameters

id (BigAutoField) – Id
interface (ForeignKey to ComponentInterface) – Interface
value (JSONField) – Value
file (FileField) – File
image (ForeignKey to Image) – Image

exception DoesNotExist

exception MultipleObjectsReturned

__init__(*args, **kwargs)[source]

clean()[source]: Hook for doing any extra model-wide validation after clean() has been called on every field by self.clean_fields. Any ValidationError raised by this method will not be associated with a particular field; it will have a special-case association with the field defined by NON_FIELD_ERRORS.

property decompress

Should the CIV be decompressed?

This is only for legacy support of zip file submission for prediction evaluation. We should not support this anywhere else as it clobbers the input directory.

image_file: The single image file for this interface

property relative_path

Where should the file be located?

Images need special handling as their names are fixed.

save(*args, **kwargs)[source]

Save the current instance. Override this in a subclass if you want to control the saving process.

The ‘force_insert’ and ‘force_update’ parameters can be used to insist that the “save” must be an SQL insert or update (or equivalent for non-SQL backends), respectively. Normally, they should not be set.

class grandchallenge.components.models.ComponentJobManager(model=None, query=None, using=None, hints=None)[source]

average_duration()[source]: Calculate the average duration that completed jobs ran for

with_duration()[source]: Annotate the queryset with the duration of completed jobs

class grandchallenge.components.models.ImportStatusChoices(value)[source]: An enumeration.

class grandchallenge.components.models.InterfaceKind[source]

Interface kind.

class InterfaceKindChoices(value): Interface kind choices.

static interface_type_file()[source]

Interface kinds that are files:

CSV file
ZIP file
PDF file
SQREG file
Thumbnail JPG
Thumbnail PNG
OBJ file
MP4 file

static interface_type_image()[source]

Interface kinds that are images:

Image
Heat Map
Segmentation

static interface_type_json()[source]

Interface kinds that are json serializable:

String
Integer
Float
Bool
Anything that is JSON serializable (any object)
2D bounding box
Multiple 2D bounding boxes
Distance measurement
Multiple distance measurements
Point
Multiple points
Polygon
Multiple polygons
Lines
Multiple lines
Angle
Multiple angles
Choice (string)
Multiple choice (array of strings)
Chart

Example json for 2D bounding box annotation

{
    "type": "2D bounding box",
    "corners": [
        [ 130.80001831054688, 148.86666870117188, 0.5009999871253967],
        [ 69.73332977294922, 148.86666870117188, 0.5009999871253967],
        [ 69.73332977294922, 73.13333129882812, 0.5009999871253967 ],
        [ 130.80001831054688, 73.13333129882812, 0.5009999871253967]
    ],
    "version": { "major": 1, "minor": 0 }
}

Example json for Multiple 2D bounding boxes annotation

{
    "type": "Multiple 2D bounding boxes",
    "boxes": [
        {
        "corners": [
            [ 92.66666412353516, 136.06668090820312, 0.5009999871253967],
            [ 54.79999923706055, 136.06668090820312, 0.5009999871253967],
            [ 54.79999923706055, 95.53333282470703, 0.5009999871253967],
            [ 92.66666412353516, 95.53333282470703, 0.5009999871253967]
        ]},
        {
        "corners": [
            [ 92.66666412353516, 136.06668090820312, 0.5009999871253967],
            [ 54.79999923706055, 136.06668090820312, 0.5009999871253967],
            [ 54.79999923706055, 95.53333282470703, 0.5009999871253967],
            [ 92.66666412353516, 95.53333282470703, 0.5009999871253967]
        ]}
    ],
    "version": { "major": 1, "minor": 0 }
}

Example json for Distance measurement annotation

{
    "type": "Distance measurement",
    "start": [ 59.79176712036133, 78.76753997802734, 0.5009999871253967 ],
    "end": [ 69.38014221191406, 143.75546264648438, 0.5009999871253967 ],
    "version": { "major": 1, "minor": 0 }
}

Example json for Multiple distance measurement annotation

{
    "type": "Multiple distance measurements",
    "lines": [
        {
            "start": [ 49.733333587646484, 103.26667022705078, 0.5009999871253967 ],
            "end": [ 55.06666564941406, 139.26666259765625, 0.5009999871253967 ]
        },
        {
            "start": [ 49.733333587646484, 103.26667022705078, 0.5009999871253967 ],
            "end": [ 55.06666564941406, 139.26666259765625, 0.5009999871253967 ]
        }
    ],
    "version": { "major": 1, "minor": 0 }
}

Example json for Point annotation

{
    "point": [ 152.13333129882812, 111.0, 0.5009999871253967 ],
    "type": "Point",
    "version": { "major": 1, "minor": 0 }
}

Example json for Multiple points annotation

{
    "type": "Multiple points",
    "points": [
        {
            "point": [
                96.0145263671875, 79.83292388916016, 0.5009999871253967
            ],
        },
        {
            "point": [
                130.10653686523438, 115.52300262451172, 0.5009999871253967
            ],
        }
    ],
    "version": { "major": 1, "minor": 0 }
}

Example json for Polygon annotation

{
    "type": "Polygon",
    "seed_point": [ 76.413756408691, 124.014717102050, 0.5009999871253967 ],
    "path_points": [
        [ 76.41375842260106, 124.01471710205078, 0.5009999871253967 ],
        [ 76.41694876387268, 124.0511828696491, 0.5009999871253967 ],
        [ 76.42642285078242, 124.0865406433515, 0.5009999871253967 ]
    ],
    "sub_type": "brush",
    "groups": [],
    "version": { "major": 1, "minor": 0 }
}

Example json for Multiple polygon annotation

{
    "type": "Multiple polygons",
    "polygons": [
        {
            "seed_point": [ 55.82666793823242, 90.46666717529297, 0.5009999871253967 ],
            "path_points": [
                [ 55.82667599387105, 90.46666717529297, 0.5009999871253967 ],
                [ 55.93921357544119, 90.88666314747366, 0.5009999871253967 ],
                [ 56.246671966051736, 91.1941215380842, 0.5009999871253967 ],
                [ 56.66666793823242, 91.30665911965434, 0.5009999871253967 ]
            ],
            "sub_type": "brush",
            "groups": [ "manual"],
        },
        {
            "seed_point": [ 90.22666564941406, 96.06666564941406, 0.5009999871253967 ],
            "path_points": [
                [ 90.22667370505269, 96.06666564941406, 0.5009999871253967 ],
                [ 90.33921128662283, 96.48666162159475, 0.5009999871253967 ],
                [ 90.64666967723338, 96.7941200122053, 0.5009999871253967 ]
            ],
            "sub_type": "brush",
            "groups": []
        }
    ],
    "version": { "major": 1, "minor": 0 }
}

Example json for Line annotation

{
    "type": "Line",
    "seed_points": [[1, 2, 3], [1, 2, 3]],
    "path_point_lists": [
        [[5, 6, 7], [8, 9, 10], [1, 0, 10], [2, 4, 2]],
        [[5, 6, 7], [8, 9, 10], [1, 0, 10], [2, 4, 2]]
    ],
    "version": { "major": 1, "minor": 0 }
}

Example json for Multiple lines annotation

{
    "type": "Multiple lines",
    "lines": [
        {
            "seed_points": [[1, 2, 3], [1, 2, 3]],
            "path_point_lists": [
                [[5, 6, 7], [8, 9, 10], [1, 0, 10], [2, 4, 2]],
                [[5, 6, 7], [8, 9, 10], [1, 0, 10], [2, 4, 2]],
            ]
        },
        {
            "seed_points": [[1, 2, 3], [1, 2, 3]],
            "path_point_lists": [
                [[5, 6, 7], [8, 9, 10], [1, 0, 10], [2, 4, 2]],
                [[5, 6, 7], [8, 9, 10], [1, 0, 10], [2, 4, 2]],
            ]
        }
    ],
    "version": { "major": 1, "minor": 0 }
}

Example json for Angle annotation

{
    "type": "Angle",
    "lines": [[[180, 10, 0.5], [190, 10, 0.5]],[[180, 25, 0.5], [190, 15, 0.5]]],
    "version": {"major": 1, "minor": 0}
}

Example json for Multiple angles annotation

{
    "type": "Multiple angles",
    "angles": [
        {
            "lines": [[[110, 135, 0.5], [60, 165, 0.5]],[[70, 25, 0.5], [85, 65, 0.5]]],
            "name": "First angle"
        },
        {
            "lines": [[[130, 210, 0.5], [160, 130, 0.5]], [[140, 40, 0.5], [180, 75, 0.5]]],
            "name": "Second angle"
        },
        {
            "lines": [[[20, 30, 0.5], [20, 100, 0.5]], [[180, 200, 0.5], [210, 200, 0.5]]],
            "name": "Third angle"
        }
    ],
    "version": {"major": 1, "minor": 0}
}

Example json for Chart (for more examples, see here<https://vega.github.io/vega-lite/examples/> and here<https://grand-challenge.org/blogs/visualisations-for-challenges/>)

{
   "$schema":"https://vega.github.io/schema/vega-lite/v5.json",
   "width":300,
   "height":300,
   "data":{
      "values":[
         {
            "target":"Negative",
            "prediction":"Negative",
            "value":198
         },
         {
            "target":"Negative",
            "prediction":"Positive",
            "value":9
         },
         {
            "target":"Positive",
            "prediction":"Negative",
            "value":159
         },
         {
            "target":"Positive",
            "prediction":"Positive",
            "value":376
         }
      ],
      "format":{
         "type":"json"
      }
   },
   "layer":[
      {
         "mark":"rect",
         "encoding":{
            "y":{
               "field":"target",
               "type":"ordinal"
            },
            "x":{
               "field":"prediction",
               "type":"ordinal"
            },
            "color":{
               "field":"value",
               "type":"quantitative",
               "title":"Count of Records",
               "legend":{
                  "direction":"vertical",
                  "gradientLength":300
               }
            }
         }
      },
      {
         "mark":"text",
         "encoding":{
            "y":{
               "field":"target",
               "type":"ordinal"
            },
            "x":{
               "field":"prediction",
               "type":"ordinal"
            },
            "text":{
               "field":"value",
               "type":"quantitative"
            },
            "color":{
               "condition":{
                  "test":"datum['value'] < 40",
                  "value":"black"
               },
               "value":"white"
            }
         }
      }
   ],
   "config":{
      "axis":{
         "grid":True,
         "tickBand":"extent"
      }
   }
}

class grandchallenge.components.models.InterfaceKindChoices(value)[source]: Interface kind choices.

class grandchallenge.components.models.InterfaceSuperKindChoices(value)[source]: An enumeration.